Well, that's interesting. Installed the mod, removed the DLC file structure and put everything else in Designs and Gfx. Started a game and had one custom merc available. Was able to buy it. Then went to the main menu, started a second game, and got a CTD when I attempted to talk to the mercenary guild.
Checking the debug.err file I see the following (slightly edited):
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_BragosEmporium. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_Pansophicon. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_TheOlFortyNiner. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_BragosEmporium. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_Pansophicon. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_TheOlFortyNiner. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_BragosEmporium. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_Pansophicon. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_TheOlFortyNiner. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_BragosEmporium. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_Pansophicon. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_TheOlFortyNiner. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_BragosEmporium. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_Pansophicon. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_TheOlFortyNiner. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_BragosEmporium. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_Pansophicon. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_TheOlFortyNiner. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_BragosEmporium. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_Pansophicon. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
Debug Message: Ship Design: Missing ship design for ship class static blueprint GRM_Ship_TheOlFortyNiner. Was this caused by pointing to a custom ship design? Blueprints must point to core or modded ships.
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Not sure of how much help this is, but I think I will boot into OSX (it's far easier for me to do deep dive on XMLs over there) and do some digging to see what, if anything, is missing. 