I have a similar problem. However, there seems to be a graphical glitch in my ship stack area, when I click on it, it crashes the game. Not only that, but now, at what seems at random, the inital menu screen will freeze right before the fly-in movie starts, and right after the doors open. Here is the debug that I found.
Debug Message: ******* Starting Game Shell *******
Debug Message: Going Fullscreen
Debug Message: Preparing to change display settings.
Debug Message: RGB in format 5:6:5, Masks reported as f800:7e0:1f
Debug Message: Now Fullscreen
Debug Message: Shell initialization complete
Debug Message: ***** Initializing Game *****
Debug Message: Timer Frequency is 0 369e99
Debug Message: Added fonts: VerdanaWhite11 VerdanaWhite12B VerdanaYellow11 VerdanaLtBlue11 VerdanaGreen11
Debug Message: Added fonts: VerdanaRed11 VerdanaRed12 VerdanaYellow12 VerdanaOrange12 VerdanaLtBlue12
Debug Message: Added fonts: VerdanaDkBlue12 VerdanaLtBlue12B Verdana00Race11 Verdana01Race11 Verdana02Race11
Debug Message: Added fonts: Verdana03Race11 Verdana04Race11 Verdana05Race11 Verdana00Race12B Verdana01Race12B
Debug Message: Added fonts: Verdana02Race12B Verdana03Race12B Verdana04Race12B Verdana05Race12B VerdanaOrange12B
Debug Message: Added fonts: font2 font1 Comic10 Comic12 Comic12B
Debug Message: Added fonts: Comic14 Comic14B Comic16 Comic16B Comic18
Debug Message: Added fonts: Comic18B Celtic14 Celtic12 Celtic10 Basker14
Debug Message: Added fonts: Basker16 BabylonBlue11B BabylonBlue11 BabylonBlue10B ArialGreenB10
Debug Message: Added fonts: ArialYellowB12 ArialLtBlueB12 ArialDkBlueB12 ArialGreenB12 ArialRedB12
Debug Message: Added fonts: ArialWhite12B ArialWhite14 ArialWhite16 ArialOrange12B ArialLtBlue12B
Debug Message: Added fonts: ArialLtBlue14 ArialGreen14 ArialRed14 ArialYellow14 ArialGreen16
Debug Message: Added fonts: ArialYellow16 Arial13B Arial16B2 Arial10 Arial12
Debug Message: Added fonts: Arial12B Arial14 Arial14B Arial16 Arial16B
Debug Message: Added fonts: Arial18 Arial18B GaraWGold11B GaraBW14B GaraW11B
Debug Message: Initializing sound card.
Debug Message: Game Initialization completed.
Debug Message: Creating cutscene window.
Debug Message: Creating soundtrack handler.
Debug Message: Creating movie handler.
Debug Message: Create setup screens.
Debug Message: Creating opening menu.
Debug Message: MemMan: Unable to find pointer in GetBlockInfo. Memory system: DataMan
ASSERT ERROR in file g:\projects\pear\source\memman.cpp at line 579.
Debug Message: MemMan: Trying to free memory that has not been allocated. Memory System DataMan
ASSERT ERROR in file g:\projects\pear\source\memman.cpp at line 361.
Debug Message: Creating player setup screen.
Debug Message: Creating race setup screen.
Debug Message: Initialize Game Options.
Debug Message: Begin playing intro movie.
Debug Message: Initialize Tilemaps
Debug Message: Set mouse.
Debug Message: Set update timer.
Debug Message: Stopping bink.
Debug Message: Closing bink.
Debug Message: Bink stopped.
Debug Message: Scanning sprites.
Debug Message: Sorting save game list by time.
Debug Message: Scanning Models.
ASSERT ERROR in file g:\projects\pear\source\model2d.cpp at line 2400.
Debug Message: Animation Small has 17 frames of animation, which does not divide evenly into 32 facings.
Debug Message: Scanning bitmaps.
Debug Message: Initializing Galaxy.
Debug Message: Error. String Not Found. Book:DomesticGovernors String: DefaultGovernor5
Debug Message: Begin creating other screens.
Debug Message: Error. String Not Found. Book:SubmitScreen String: LastNameTitle
Debug Message: Loading game.
Debug Message: Could not find animation titled Default in model 35Decoration (PlayAnimation)
Debug Message: Could not find animation titled Default in model 35Decoration (PlayAnimation)
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: Total Ships: 527 & 0 are dead
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: Make Ship Leave Orbit: Brad Version
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: AI-X: Found no places to send my colony ship.
Debug Message: Stopping bink.
Debug Message: Closing bink.
Debug Message: Bink stopped.
Debug Message: Stopping bink.
Debug Message: Closing bink.
Debug Message: Bink stopped.