So after spending the weekend doing other stuff I sat daown again to mess with this issue and and found that I had set my adapter DPI to large (120) rather ten normal. Putting it on normal has fixed the issue.
It is my understanding that any BIOS that adds a company logo to the boot screen will have trouble with this program. I would check the support forums at Stardock to see if there is a workaround. There is a way to do it by messing with the BIOS, I read it in a tutorial awhile back, but since I don't have the issue I didn't bookmark it, I just remember it was stickied at the forums somewhere. If you already know you aren't going to even try to mess with a bios, particularly on a warrantied com
WindowBlinds version : WindowBlinds 6.03 (build 45 x86) WindowBlinds is installed correctly on this PC WindowBlinds appears to be activated on this PC Your machine supports per pixel borders on WindowBlinds skins. (SyncMaster 910MP/199MP,SyncMaster Magic CX912MP) 1 is attached to RADEON X800 PRO Wblind.dll 2008/03/31 12:21:20 Wbsrv.dll 2008/03/31 16:25:10 Wbconfig.exe  
Stardock Forums
WinCustomize Forums